PubMed_Diabetes

The Pubmed Diabetes dataset consists of 19717 scientific publications from PubMed database pertaining to diabetes classified into one of three classes. The citation network consists of 44338 links. Each publication in the dataset is described by a TF/IDF weighted word vector from a dictionary which consists of 500 unique words.

Original source: linqs.soe.ucsc.edu

Versions

  • PubMed_Diabetes (by Jan Motl)

Dataset details

Associated task:
Classification
Domain:
Education
Data types:
Size:
44.1 MB
Count of tables:
3
Count of rows:
1,051,972
Count of columns:
7
Missing values:
No
Compound keys:
No
Loops:
Yes
Type:
Real
Instance count:
20,055
Target table:
paper
Target column:
class_label
Target ID:
paper_id
Target timestamp:
?

How to download the dataset

The datasets are publicly available directly from MariaDB database.

  1. Open your favourite MariaDB client (MySQL Workbench works, but see FAQ)
  2. Use following credentials:
    • hostname: db.relational-data.org
    • port: 3306
    • username: guest
    • password: relational
  3. Export "PubMed_Diabetes" database (or other version of the dataset, if available) in your favourite format (e.g. CSV or SQL dump).